pdb2sql.superpose.superpose

pdb2sql.superpose.superpose(mobile, target, method='svd', only_backbone=True, export=True, **kwargs)[source]

superpose two complexes

Parameters
  • pdb (target {str or pdb2sql} -- name or sqldb of the target) –

  • pdb

Keyword Arguments
  • (default (only_backbone {bool} -- use only backbone atos to align) – {‘svd’})

  • (default – True)

  • pdb (**kwargs -- keyword arguments used to select a portion of the) –

Example

>> pdb1 = ‘1AK4_5w.pdb’ >> pdb2 = ‘1AK4_10w.pdb’ >> superpose(pdb1, pdb2, chainID=’A’)